PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09969g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 194aa MW: 20483.8 Da PI: 5.1978

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09969g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	83.8	4.2e-26	1	74	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......k 89 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s+ +ss + + Niben101Scf09969g00001.1 1 MPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStLSVSLRNSSVSSSVSapldyksS 74 9**********************************************888644444433332222233433220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.645	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.7E-23	1	80	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MPIVCAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTIPASFS TLSVSLRNSS 60 VSSSVSAPLD YKSSSQPSIS PAPFLLGKRL RHEDDDGSGE KDDASNGATF VGPTPGFWAV 120 AARPDFGQVW SFAPPPPQEM VAPTPSSAAR FLQQQMGEES AARLGNYFPI AQGHLNLLAS 180 LSGPSSGRRD DDGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233152.1	1e-115	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	4e-64	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1J6JAK1	1e-114	A0A1J6JAK1_NICAT; Transcription factor tcp7
STRING	XP_009760508.1	1e-103	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-58	TCP family protein