PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf10196g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BES1

Protein Properties

Length: 276aa MW: 30583.8 Da PI: 5.3516

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10196g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	145.4	5e-45	68	214	1	137
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagss 85 ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ + + +++g+ Niben101Scf10196g01002.1 68 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSHSQVTGATGGTP 152 6899****************************************************************555555455555555 PP DUF822 86 asaspesslq..........sslkssalaspvesysaspksssfpspssldsislasaasll 137 +++ ++ss++ ++ + s ++s ++++++++ks+ +p +s +ds s+a ++++ Niben101Scf10196g01002.1 153 TTMVTSSSSHipiqhtppasLKGTPSGFQSTADHSACQMKSVFIPTSSPYDSSSTARSQTSA 214 55444444332110000102344568899********************99988654443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.3E-38	69	208	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MASEMQRYDT NEDDEEMDVK EEDDEDDDDE DKNGTMHAMA DFDGVHGSSC SNRFQHHQQY 60 QEPPTPQGGS RRCRPLEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA 120 LAREAGWVVL PDGTTFPSKS HSQVTGATGG TPTTMVTSSS SHIPIQHTPP ASLKGTPSGF 180 QSTADHSACQ MKSVFIPTSS PYDSSSTARS QTSAMVADGQ DTQNDPFLVV SGDSIDKQVT 240 DVHTKLQERD FAGTPYIPVY VMLPVRLLNL NFRMQI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019260938.1	1e-157	PREDICTED: beta-amylase 7-like isoform X2
Swissprot	O80831	4e-69	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A1U7WD88	1e-155	A0A1U7WD88_NICSY; Beta-amylase
STRING	XP_009772614.1	1e-156	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	2e-53	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]