PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf10235g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 183aa MW: 21355.9 Da PI: 4.6546

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10235g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Niben101Scf10235g02001.1 35 YECNFCKRGFTNAQALGGHMNIH 57 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.35E-7	33	62	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.2E-5	33	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.261	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MASEKNNNYS DSSSEDNDRE SEKFNDDNTG IGRSYECNFC KRGFTNAQAL GGHMNIHRKD 60 KLKAKQNSNQ ESSSIYSRKS QDQANAFELP ILCHAQHHYY SRVQMNYQFD FQPPNPSYQH 120 VHDSRPLQEN YNYFGTHDNY DDTNLSLRIE PTLIDDEEEE GKKDINVDEN ELDLELRLGY 180 NNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613300.1	1e-115	PREDICTED: transcriptional regulator TAC1-like
Refseq	XP_016482282.1	1e-115	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A1S4B018	1e-113	A0A1S4B018_TOBAC; transcriptional regulator TAC1-like
STRING	XP_009613300.1	1e-114	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	3e-15	C2H2 family protein