PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf10262g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 200aa MW: 22034.1 Da PI: 5.7439

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10262g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.5	1.3e-30	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+G+vg++ Niben101Scf10262g00006.1 2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRAGLMSFISAVPENQRPGLFQSLLYEAAGRTVNPVNGVVGLL 86 6********************************************************************************** PP DUF260 81 lklqqqleqlkaela 95 ++++++++q+++e+ Niben101Scf10262g00006.1 87 WTGSWHVCQAAVETI 101 ********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.835	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRAGLMS FISAVPENQR 60 PGLFQSLLYE AAGRTVNPVN GVVGLLWTGS WHVCQAAVET ILRGGTLSPI PELFGKSSEL 120 DEESECINVF KLLNHTQNTR SKMQKGRRAS DEAATEVLQL ENLDLSLLMQ GFQSEIVYSP 180 SRKSEESVTT TCFESSLGDR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225598.1	1e-133	PREDICTED: LOB domain-containing protein 37-like isoform X1
Swissprot	Q9SN23	1e-74	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A314KT94	1e-132	A0A314KT94_NICAT; Lob domain-containing protein 37
STRING	XP_009777174.1	1e-132	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	4e-77	LOB domain-containing protein 38