PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10287g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 149aa    MW: 17071.4 Da    PI: 10.1031
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10287g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.4e-131561147
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                              k+ie k  r  tfskRr+g+ KKA+ L   Cda++ +++ s+ gk +
  Niben101Scf10287g01013.1 15 KKIEKKDDRFATFSKRRKGLYKKASNLVSQCDADIGIVLSSPAGKPF 61
                              689****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.268767IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-17766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-20877IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-13929IPR002100Transcription factor, MADS-box
PfamPF003194.9E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MVSKKSKGRQ KIAIKKIEKK DDRFATFSKR RKGLYKKASN LVSQCDADIG IVLSSPAGKP  60
FSFFHPTTDV VIARFQNPDM QLSESNGLVA AYARNKVNHL NSRLEELDTR EDAAIAQTRF  120
YDQMSKTRQN DWWESIEQLN AHEITMFEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248376.13e-99PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6IMC07e-98A0A1J6IMC0_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009787785.15e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-23AGAMOUS-like 62