PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10305g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 93aa    MW: 10836.5 Da    PI: 6.7645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10305g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-076686323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ Cg sF ++ +Lk+H+++H
  Niben101Scf10305g00007.1 66 CEECGVSFQNPAHLKQHMQSH 86
                              *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-81426No hitNo description
SuperFamilySSF576675.97E-85587No hitNo description
Gene3DG3DSA:3.30.160.602.2E-66087IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00226486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1366491IPR007087Zinc finger, C2H2
PfamPF128742.9E-56686No hitNo description
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MGEEKKEVIF RDIRRYYCEF CGFAAPRSPS SPLISSPIIM YDEMERRKDE ANEDVKKKKG  60
PKMNICEECG VSFQNPAHLK QHMQSHSLEI EVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246843.16e-42PREDICTED: transcription factor IIIA-like isoform X1
TrEMBLA0A1J6IV791e-40A0A1J6IV79_NICAT; Transcription factor iiia
STRINGXP_009804391.13e-40(Nicotiana sylvestris)
STRINGXP_009592258.13e-40(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-13transcription factor IIIA