PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10342g01018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 377aa    MW: 41652.8 Da    PI: 6.3775
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10342g01018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57377.62.1e-2446138297
                    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 
                               +f+r+w+e Dei +LqGl+d     g+  +  d++ fy  +++ +s  ++ksql+eK+rrL+kKf+  +++ ++g + s+ ++hd
  Niben101Scf10342g01018.1  46 KFHRIWTEPDEIRFLQGLLDD----GSLLFPrDLNIFYTRFSNTMSQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDLSLLSPHD 126
                               699*****************8....7766666***************************************************** PP

                    DUF573  86 qkifelskkiWg 97 
                               +  ++ls+++W+
  Niben101Scf10342g01018.1 127 RALYDLSRQLWH 138
                               ***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.9E-2747138IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDSTLPLSQS LTDTASKLPI KRKTTGDPFF SSTTTGSDPQ KPPPFKFHRI WTEPDEIRFL  60
QGLLDDGSLL FPRDLNIFYT RFSNTMSQPY TKSQLSEKLR RLRKKFRVIS SRLSKGLDLS  120
LLSPHDRALY DLSRQLWHPD FAHTSPFNAD KSRKSNLVGV KVSFLPTIPS APSQGQGLNQ  180
VDTGPGQGRF LPTIPYVSGP GPGQDSNQDG IASGQDLNQD CTGSDQVKFS TDTDALSVGN  240
SNRITGKKPT HDGVSVSNEN VEVGQVNNDE IDEFADGDGK LREVNVVFES GDVGYKRVGC  300
SCLDGPIRVG VGCGIGEIAA KVVMDVFDEC LKDFKNCGIL KEENLDKFEE RWREQRVAEL  360
NVLARRLRLV LEQSLPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797633.10.0PREDICTED: uncharacterized protein LOC104244032
RefseqXP_016496498.10.0PREDICTED: uncharacterized protein LOC107815434
TrEMBLA0A1S4C5X90.0A0A1S4C5X9_TOBAC; uncharacterized protein LOC107815434
TrEMBLA0A1U7Y3C50.0A0A1U7Y3C5_NICSY; uncharacterized protein LOC104244032
STRINGXP_009797633.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-19DNA-binding storekeeper protein-related transcriptional regulator