PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10405g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24837.4 Da    PI: 9.4665
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10405g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.63.8e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii++++gk++ey+s
  Niben101Scf10405g00002.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYGNSGKMHEYCS 59
                              79***********************************************96 PP
2K-box76.47.6e-2671169199
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               yq++sg++l+++k+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ +e++L+++l++i +k++e+l++  ++ q  e+
  Niben101Scf10405g00002.1  71 YQRTSGRRLWDTKHENLSNEIDRIKKENDSMQIKLRHLKGEDINSLNHKELMVMEEALQNGLSSISAKQSEILRMVRKNDQILEE 155
                               78899999***************************************************************************** PP

                     K-box  86 elqeenkaLrkkle 99 
                               e+++ + a ++k +
  Niben101Scf10405g00002.1 156 EHKQLQYASHQKEM 169
                               ****9999888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.847161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.08E-38280No hitNo description
SuperFamilySSF554551.07E-35296IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1682162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.70584170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIYGN SGKMHEYCSP  60
STTIADMLDG YQRTSGRRLW DTKHENLSNE IDRIKKENDS MQIKLRHLKG EDINSLNHKE  120
LMVMEEALQN GLSSISAKQS EILRMVRKND QILEEEHKQL QYASHQKEMA AMGGNMRVIQ  180
EEVYHQRDRD YEYQMPFSLR VQPMQPNLHE RM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-16159159MEF2 CHIMERA
6byy_B6e-16159159MEF2 CHIMERA
6byy_C6e-16159159MEF2 CHIMERA
6byy_D6e-16159159MEF2 CHIMERA
6bz1_A7e-16159159MEF2 CHIMERA
6bz1_B7e-16159159MEF2 CHIMERA
6bz1_C7e-16159159MEF2 CHIMERA
6bz1_D7e-16159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803901.11e-154PREDICTED: floral homeotic protein PMADS 2
RefseqXP_016483128.11e-154PREDICTED: floral homeotic protein PMADS 2-like
SwissprotQ074741e-145MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A499Q4411e-155A0A499Q441_NICBE; GLOBOSA2
STRINGXP_009803901.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]