PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10438g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 194aa    MW: 21710.7 Da    PI: 5.1632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10438g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.59e-1012373055
                       AP2 30 rfslgkfgtaeeAakaaiaarkkleg 55
                               ++lg+f+tae+Aa+a+++a++k++g
  Niben101Scf10438g00009.1 12 MVWLGTFDTAEDAARAYDEAALKFRG 37
                              58**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.841145IPR001471AP2/ERF domain
CDDcd000182.11E-19147No hitNo description
SMARTSM003801.1E-10651IPR001471AP2/ERF domain
PfamPF008471.3E-51037IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-171046IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-121147IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MIDDDETNIR TMVWLGTFDT AEDAARAYDE AALKFRGSKA KLNFPENIKL LPTSSTHEQS  60
PLKLYPHQNI VGNLGLPTST FPTDFVENTR VSYFSNDYPI IHTQPNYYNN TNISPQIFLN  120
DDFQRLRPPS SLLNQFQNSS SSSSSSLSSS SSSSQLPFLP RMFFQGSQPT QSSGNDFRAT  180
LSDSTYDHPS SSSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767382.13e-96PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_016473785.13e-96PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S4AAU46e-95A0A1S4AAU4_TOBAC; ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1U7VH146e-95A0A1U7VH14_NICSY; ethylene-responsive transcription factor ERF113-like
STRINGXP_009767382.11e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-10ERF family protein