PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf10556g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 257aa MW: 28497.5 Da PI: 5.1227

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10556g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.4	5.4e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Niben101Scf10556g00012.1 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 69 899*************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.0E-18	1	68	IPR009072	Histone-fold
SuperFamily	SSF47113	3.35E-19	1	71	IPR009072	Histone-fold
Pfam	PF00808	2.0E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYDITLRR GAKTVNSLHL KHCVQSYNVF 60 DFLREVVSKV PDYGHSDAAG EMPKRRKVAM EEHHDSEDEF KRSRTETCHA STSGRGRGRG 120 RGRGRGRGRA DRELSRPDMQ LESCTSVQQS VLQNPNPGTH TDNCTEPKGS PKQDSSACDR 180 ESSVVTTPNL KVNVDESGDK SAAPVIAACN PSPRPANEKV EEGPQWSLEM ERMVIDPAHM 240 SQLNSSLAEE EEDYDEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	128	RGRGRGRGRGR
2	120	129	RGRGRGRGRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780056.1	0.0	PREDICTED: dr1-associated corepressor-like
Refseq	XP_016436007.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A1S3X7Z0	0.0	A0A1S3X7Z0_TOBAC; dr1-associated corepressor-like
TrEMBL	A0A1U7WRX6	0.0	A0A1U7WRX6_NICSY; dr1-associated corepressor-like
STRING	XP_009780056.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-53	nuclear factor Y, subunit C11