PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10559g01033.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 625aa    MW: 70991.6 Da    PI: 7.7809
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10559g01033.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK46.28.8e-15438481346
                    RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 
                               ++i+l++++   s++  +AA +Lgv+ ++LKriCR yGI RWP 
  Niben101Scf10559g01033.1 438 HNINLKKIEDRSSMTQDAAADDLGVGKSTLKRICRLYGITRWPP 481
                               79*****************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.787424514IPR003035RWP-RK domain
PfamPF020426.2E-12439482IPR003035RWP-RK domain
SuperFamilySSF542772.19E-13540622No hitNo description
Gene3DG3DSA:3.10.20.2406.6E-14541621No hitNo description
PROSITE profilePS5174519.58542624IPR000270PB1 domain
SMARTSM006663.1E-13542624IPR000270PB1 domain
PfamPF005643.8E-14545623IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MESVFSEHAW SRQPNGLWVF WSERDDAEQL LNHFSFTADV VTKRMAIKER VKIALQHVEK  60
LSCNYLIQFW ASIVIDGQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAFP VELKNSTQCE  120
NDLGPPGRVF KHRLPELCTD VKNYSQQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL  180
ELVTSHQTNE WMFGNSVLPI FKMLQVVDLK SPDSYCPLNL KTVSRQVLDD QQCTLGGLYK  240
AIEVVCQEHQ FLFARIWVSV ADSWCRGKAI IVRQRHIAVN DNQNLSLFKY ASGLQNIREG  300
YGVVGRAFSS KSSCFCRDVT QLSIIEYPLV TCAREAGLTG CFAICLSALE TNQKLSLDID  360
EINAARDSVA VNEEQCNSTG SSTSAETSKN KERKLQLELS TRQAKQGANA VNKRRNSKRT  420
FTYESEIQKE RERIDRDHNI NLKKIEDRSS MTQDAAADDL GVGKSTLKRI CRLYGITRWP  480
PKNKEKKRKC SHSRKMKSIL PAEEDVNART EFQQSSDSPN NEDTINGAKV GAHVTEIRDG  540
TAVITKVKYG DRMPKLKLPL SSKMKDLEEE VAKRVESSIE SFDFTYVDKD GDTILIKCDE  600
DLMECFLHCR SSESTTVKMS ITPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480488PKNKEKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452931.10.0PREDICTED: protein NLP3-like, partial
RefseqXP_016486464.10.0PREDICTED: protein NLP7-like isoform X1
TrEMBLA0A1S3YL070.0A0A1S3YL07_TOBAC; protein NLP3-like
TrEMBLA0A1S4BC540.0A0A1S4BC54_TOBAC; protein NLP7-like isoform X1
STRINGXP_009790888.10.0(Nicotiana sylvestris)
STRINGXP_009601280.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13034410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.18e-43NIN like protein 7