PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf10559g01036.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 119aa MW: 13589.2 Da PI: 5.825

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10559g01036.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	24.6	7.1e-08	8	58	45	95
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 + +lpe++r da+ss+vy+A++r+rd + +i+k ++ql++l +e a Niben101Scf10559g01036.1 8 VEVELPEHQRGDAVSSMVYKANVRVRDHLCNNDLIISKHNWQLHKLTHENA 58 556899***************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	6.2E-6	10	58	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MQLAISQVEV ELPEHQRGDA VSSMVYKANV RVRDHLCNND LIISKHNWQL HKLTHENATI 60 FFDWHGQKLA GKCVAVVLTY SNSTNYISFT MDMVVDQANM GEFLRTSLAD PSRDDDDHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-08	LOB domain-containing protein 4