PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10713g00040.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 253aa    MW: 29139.8 Da    PI: 6.66
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10713g00040.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.58.9e-09211337128
                       NAM  37 vdiykvePwdLpk......kvkaeekew......yfFskrdkkyatgkrknra..tksgyWkatgkdkevlsk......kgel.. 99 
                               +d+yk ePw   +           e++w      yf ++r+k+   + r  r+   + g Wk++ k+k+v+ k      +  +  
  Niben101Scf10713g00040.1   2 CDVYKQEPWVTYShghstgG---VEDNWdtsiyrYFITPRKKN---KGRFCRTvgKRGGSWKQQDKEKAVTIKscdqrkR--Dli 78 
                               69999****98633443331...22233334433555555443...4567774124589************997765433..156 PP

                       NAM 100 vglkktLvfykgrapkge......ktdWvmheyrl 128
                               +g  k++ + ++++ k          +W+m+ey l
  Niben101Scf10713g00040.1  79 IGRMKSMCYTEKNNTKCInsddynDGKWLMKEYVL 113
                               **********76555544222232778******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.5361137IPR003441NAC domain
SuperFamilySSF1019419.29E-113135IPR003441NAC domain
PfamPF023652.0E-69113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MCDVYKQEPW VTYSHGHSTG GVEDNWDTSI YRYFITPRKK NKGRFCRTVG KRGGSWKQQD  60
KEKAVTIKSC DQRKRDLIIG RMKSMCYTEK NNTKCINSDD YNDGKWLMKE YVLSDPILNK  120
FSNSERKDYV ICAIKKLPKR SNTCSFSQTS NVSTTMESCS ELEKVDTEVT SVMNNYVVHP  180
LMDQDYSFDQ AIVESVESVM AETEVSVGIN SVENQEYNEV IIPIYYVEKP MEESEVQTHE  240
VVGAGKNKRS SMH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622624.11e-148PREDICTED: uncharacterized protein LOC104113990
TrEMBLA0A1J6IJZ51e-149A0A1J6IJZ5_NICAT; Uncharacterized protein
STRINGXP_009622624.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1500848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.16e-06NAC domain containing protein 57