PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10763g00021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 245aa    MW: 28074.7 Da    PI: 9.6374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10763g00021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-17110159255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+WvAeIr p++   r+r +lg+f++aeeAa a++  + +++g
  Niben101Scf10763g00021.1 110 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFDSAEEAAFAYDVEAFRFRG 159
                               8*******9.**********954...5********************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.97E-35109169No hitNo description
Gene3DG3DSA:3.30.730.102.9E-31110168IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22110168IPR016177DNA-binding domain
PfamPF008477.3E-11110159IPR001471AP2/ERF domain
PROSITE profilePS5103223.854110167IPR001471AP2/ERF domain
SMARTSM003802.1E-39110173IPR001471AP2/ERF domain
PRINTSPR003671.3E-10111122IPR001471AP2/ERF domain
PRINTSPR003671.3E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEYAESIGNI QATTSIDRPL KKLKIPSSEH NDLRATTCDP KHYTYTAHNS RFSFPFALDD  60
QFPMQSPVQN QTMISFAPQN CFLDYDPRHL PLVQCRNTYN YGTVSTTPKR YRGVRQRHWG  120
KWVAEIRLPR KRTRLWLGTF DSAEEAAFAY DVEAFRFRGS DARLNFPHLF LSDPSVNNIE  180
ETNSAADLTT SFSNGCYQVQ HKNKRGLMPR PTTKLGAEPY EPKVSRTIGP PLVQSSPFHK  240
SILVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20109167463ATERF1
3gcc_A3e-20109167463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018624032.11e-131PREDICTED: ethylene-responsive transcription factor ERF042-like
TrEMBLA0A314KWB71e-123A0A314KWB7_NICAT; Ethylene-responsive transcription factor erf053
STRINGXP_009762241.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.13e-34ERF family protein