PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10785g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 212aa    MW: 23567.6 Da    PI: 5.8152
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10785g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-194191155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  Niben101Scf10785g01002.1 41 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRR 91
                              6899******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-134191IPR001471AP2/ERF domain
CDDcd000181.33E-2641101No hitNo description
SuperFamilySSF541719.81E-194297IPR016177DNA-binding domain
PROSITE profilePS5103220.0474299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-264299IPR001471AP2/ERF domain
SMARTSM003801.1E-2742105IPR001471AP2/ERF domain
PRINTSPR003677.1E-94354IPR001471AP2/ERF domain
PRINTSPR003677.1E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNTIKSSTSS STNKSTKPRK NIGSTVSSNG KQNAEEQQNN CRYLGVRRRP WGRYAAEIRD  60
PNTKERHWLG TFDTAEEAAL AYDRAARSMR RNNNKSNKPT QLPPLPDDIT SSGNFNYYSE  120
ESNHQATQFP AISSVSDQMI MPMSFGTNDE YQYGMTCGEL GGGGSTITTT SGTTTESYNG  180
FGFDDCLQPL QYCSSNIMQD ESNNTTLGYW FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1843102363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-1740901263Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242459.11e-58PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1J6IY263e-57A0A1J6IY26_NICAT; Ethylene-responsive transcription factor lep
STRINGXP_009773564.18e-52(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-19ERF family protein