PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf10910g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 74aa MW: 8378.73 Da PI: 10.3877

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10910g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	52	3.1e-16	34	69	264	299
GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299 ++k+L +LaaeG d+snpvD k+hWAkHG nkf+ Niben101Scf10910g00004.1 34 RHTKILLRLAAEGRDFSNPVDPKNHWAKHGSNKFIV 69 579*******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.5E-13	35	69	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MFLEGATNVE FMVGNHHVVP PPYLPMNPSK LGNRHTKILL RLAAEGRDFS NPVDPKNHWA 60 KHGSNKFIVS KLYL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613158.1	6e-17	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X1
Refseq	XP_009613159.1	3e-17	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
Refseq	XP_016435499.1	6e-17	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X1
Refseq	XP_016435500.1	3e-17	PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
TrEMBL	A0A1S3X692	8e-16	A0A1S3X692_TOBAC; protein BASIC PENTACYSTEINE7-like isoform X2
TrEMBL	A0A1S3X6F2	1e-15	A0A1S3X6F2_TOBAC; protein BASIC PENTACYSTEINE7-like isoform X1
STRING	XP_009613158.1	2e-16	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.1	1e-11	basic pentacysteine 7