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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf10974g01004.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 248aa MW: 27969.4 Da PI: 7.6129 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 32.4 | 1.7e-10 | 77 | 128 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h e+Er+RR+++ ++ Lr+ lP ++K s ++ +A +YI +Lq
Niben101Scf10974g01004.1 77 KIVHREIERQRRQEMAILYASLRQQLPLE--IIKGKRSTSDHILEAANYIEHLQ 128
678*************************7..4*********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.93E-12 | 72 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.96E-8 | 73 | 132 | No hit | No description |
| PROSITE profile | PS50888 | 12.347 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 8.8E-8 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.7E-7 | 77 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 248 aa Download sequence Send to blast |
MMDNFHSIFP LQQDVDDNDS HHQLLYSNPC NFLYQQDLVK DFAPLELDKN IQKGNKVGKT 60 SAASLPVEKT SDDKQKKIVH REIERQRRQE MAILYASLRQ QLPLEIIKGK RSTSDHILEA 120 ANYIEHLQKN VRNSENRREK LNKASNSSNR DYAKSGSSST IDSSSSTNVT VKQCLDGIEI 180 LVNCGVESEG FRLSRVLEVL LQEGLNIVNC SSTKTSASLV HTIRTEVASQ ARIDVHVIQQ 240 KLSDISFS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009804982.1 | 1e-152 | PREDICTED: transcription factor bHLH118-like | ||||
| Refseq | XP_009804989.1 | 1e-152 | PREDICTED: transcription factor bHLH118-like | ||||
| Refseq | XP_016452590.1 | 1e-152 | PREDICTED: transcription factor bHLH118-like | ||||
| TrEMBL | A0A1S3YKF9 | 1e-150 | A0A1S3YKF9_TOBAC; transcription factor bHLH118-like | ||||
| TrEMBL | A0A1U7YLP6 | 1e-150 | A0A1U7YLP6_NICSY; transcription factor bHLH118-like | ||||
| STRING | XP_009804982.1 | 1e-151 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA598 | 24 | 109 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G51790.1 | 7e-36 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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