PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11137g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 463aa    MW: 50215.5 Da    PI: 6.7433
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11137g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.7e-27173227156
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               k +++Wt+eLH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQkYR++
  Niben101Scf11137g00006.1 173 KVKVDWTTELHRRFVQAVEQL-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 227
                               5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.294170229IPR017930Myb domain
SuperFamilySSF466899.85E-18171230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-26171230IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-26173227IPR006447Myb domain, plants
PfamPF002493.6E-7176225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLAVSSLSNT TNKDERGNEM ESFTIGGGDD FPDFMGENLL DSIDFDDLFV GISDGDLLPD  60
LEMDAEIFAE FSVSSTSGDE SDVNNYNTTT TTTIKNVEQE SCLRKEVEKA SSVSASDLGS  120
GLTSLNYQGE EIVSIQKSEE STPLVNQNHV HKESDKGKKS SAQSKNNPQG KRKVKVDWTT  180
ELHRRFVQAV EQLGVDKAVP SRILEIMGID CLTRHNIASH LQKYRSHRKH LLAREAEAAS  240
WSQRRQIYGG AAAGGGGGKR DLNPWPAPTI GFPPPSAMAT QMPHFRPLHV WGHPSVDQSY  300
MHMWPKHLAS SPSPHQHPLP AWPPAAAHPS HLPPPPPSDH SFWHPHHQRV PNSLAPGTTY  360
FPAPIAPTRY TAPHPVPGIP PPAAMYKVDS GIGIRTAVAG AGQPLPKPPC AFHPSKESID  420
AAIGDVLSKP WLPLPLGLKP PAVDSVLGEL QRQGIPKIPP TCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-16170225257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249411.10.0PREDICTED: transcription activator GLK1-like
SwissprotQ9SIV34e-95GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A1J6I6P80.0A0A1J6I6P8_NICAT; Transcription activator glk1
STRINGXP_009601765.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25322356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.19e-68GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]