PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11224g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 125aa    MW: 14700.1 Da    PI: 11.1346
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11224g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP83.33.3e-2642883076
                              -S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                       SBP 30 apvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                              ap vl++gl+qrfCqqCsrfhe+sefD +krsCrr+La+hnerrrk+
  Niben101Scf11224g00008.1 42 APIVLLAGLRQRFCQQCSRFHEVSEFDGTKRSCRRHLAGHNERRRKT 88
                              789******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114117.854188IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.1E-164075IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.06E-214290IPR004333Transcription factor, SBP-box
PfamPF031104.7E-204287IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MLKRKKGQIV KDPVVKWRNV GFICVLQTST TKDINFVNSM LAPIVLLAGL RQRFCQQCSR  60
FHEVSEFDGT KRSCRRHLAG HNERRRKTPL AIKLEDNQCR QMNEENRQQK TLTNRNASFK  120
TYHIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-1842873984squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249702.11e-48PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ6Z4611e-21SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A1S4AZ432e-46A0A1S4AZ43_TOBAC; squamosa promoter-binding-like protein 3
TrEMBLA0A1U7XQY52e-46A0A1U7XQY5_NICSY; squamosa promoter-binding-like protein 3
STRINGXP_009788885.14e-47(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.29e-22squamosa promoter binding protein-like 4