PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11288g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 357aa    MW: 40186.7 Da    PI: 10.2424
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11288g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.6e-32290348259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Niben101Scf11288g03007.1 290 ADEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 348
                               69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.8E-18242287IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-34277349IPR003657WRKY domain
PROSITE profilePS5081130.71284350IPR003657WRKY domain
SuperFamilySSF1182901.57E-27287349IPR003657WRKY domain
SMARTSM007743.5E-40289349IPR003657WRKY domain
PfamPF031068.7E-28291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFFGVVRGEM EEIEEANKAA IENCHRVISL LSKPQDQNQY GNLLVRETGE AVHKFKKVVT  60
LLNSTLGHAR VRKVKQFKTP LPYNILVENP SCKINDQHKH LQLLPIDSRE NRVLEMGSNV  120
KCSLTLGSPS LELSSNSRNP LHFGQRTPLP NNNYLQQQQQ QQQRRFLLQQ QQLKQPAEMM  180
FRRSNSGISF NFDSSTCTPT MSSTRSFISS LSVDGSVANL DGSSFHLIGA SRSADQSSFQ  240
HKRRCSARGD EGSVKCGSSG RCHCSKKRKH RVKRSIKVPA ISNKLADIPA DEYSWRKYGQ  300
KPIKGSPHPR GYYKCSSMRG CPARKHVERC LEDPSMLIVT YEGEHNHPTL PSQPANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21282351775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774253.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-119WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1U7W6L20.0A0A1U7W6L2_NICSY; probable WRKY transcription factor 21
STRINGXP_009774253.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-113WRKY DNA-binding protein 21