PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11303g01019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 226aa    MW: 25451.4 Da    PI: 8.5841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11303g01019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.7e-173484155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++y GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a+++a++ l+g
  Niben101Scf11303g01019.1 34 KKYIGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDNAARLLRG 84
                              59********.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-313494No hitNo description
Gene3DG3DSA:3.30.730.105.5E-283592IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-203593IPR016177DNA-binding domain
SMARTSM003807.3E-323598IPR001471AP2/ERF domain
PROSITE profilePS5103219.6913592IPR001471AP2/ERF domain
PfamPF008472.1E-113584IPR001471AP2/ERF domain
PRINTSPR003673.1E-73647IPR001471AP2/ERF domain
PRINTSPR003673.1E-75874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MESSKSPSSE SLNKSSKNIQ EKQVTKTKSL NDGKKYIGVR QRPSGRWVAE IKDSSQKLRL  60
WLGTFDRAEE AALAYDNAAR LLRGRNAKTN FKYQGILKPN EENCSLLEKN PRLYQLLKLA  120
IMKKIAGNKY QNEIETDQPF VQENMGCDQD KEEICRIQLL QGSSSKVYSS VIVAPSFSAS  180
ITHQSGKKDD EEEDGNHYQT SAQLFECLFS HANNSSVENN GLNSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-153491159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-153391362ATERF1
3gcc_A2e-153391362ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248985.11e-146PREDICTED: ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A1J6IBE31e-144A0A1J6IBE3_NICAT; Ethylene-responsive transcription factor rap2-11
STRINGXP_009762079.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11