PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11341g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 162aa    MW: 18546.2 Da    PI: 10.4172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11341g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-173281255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a+++a++ l+g
  Niben101Scf11341g00009.1 32 KFIGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDNAARLLRG 81
                              899******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.18E-313191No hitNo description
Gene3DG3DSA:3.30.730.109.8E-283289IPR001471AP2/ERF domain
SMARTSM003801.9E-313295IPR001471AP2/ERF domain
PROSITE profilePS5103219.2693289IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-193290IPR016177DNA-binding domain
PfamPF008473.7E-113281IPR001471AP2/ERF domain
PRINTSPR003676.2E-73344IPR001471AP2/ERF domain
PRINTSPR003676.2E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MESSKSPSSK NIQEKQVRKR KSKLISSNDG KKFIGVRQRP SGRWVAEIKD SSQKLRLWLG  60
TFDRAEEAAL AYDNAARLLR GRNAKTNFKY QGILKPNEEN CSLLGKNPRL YQLLKLAIMK  120
KLAGNTYQNE IETETFVQEN MGCDQYKEEI SRIQLQGSSS KE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143088362ATERF1
3gcc_A1e-143088362ATERF1
5wx9_A2e-1432911474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420KQVRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762079.11e-102PREDICTED: ethylene-responsive transcription factor ERF086-like
RefseqXP_016479249.11e-102PREDICTED: ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A1S4ARD91e-101A0A1S4ARD9_TOBAC; ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A1U7VIC41e-101A0A1U7VIC4_NICSY; ethylene-responsive transcription factor ERF086-like
STRINGXP_009762079.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-18related to AP2 11