PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11383g00017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 259aa    MW: 28029 Da    PI: 9.7884
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11383g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57356.48.2e-181574197
                    DUF573 41 vkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                              +k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +fe+s+kiW 
  Niben101Scf11383g00017.1  1 IKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATFEISRKIWT 57
                              68999***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.1E-17156IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
IKSKFQLDFN KNQLVEKLRR LKKKYRTVMS KMGSGKEFVF KSAHDHATFE ISRKIWTNVG  60
SAVRGGSNGV AGSVVLYAPP EDGGLDDDDA HVNPNPYAND LIDHSPKFNL NSNPNGIDIK  120
TPRPRKRSPA ASTEAVKPSG GSATVPLAAA PVAEVAATVA ASMPSLIEET VRNCVSPIFK  180
ELLNSVANLN GPSRGFGFGG MGMNPIPLGF GGGAMSLEMM GDEKWRKQQM LELEVYSKRL  240
ELVQDQIKAQ LEELRSMGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507116.11e-172PREDICTED: uncharacterized protein LOC107824825
TrEMBLA0A1S4D1511e-171A0A1S4D151_TOBAC; uncharacterized protein LOC107824825
STRINGXP_009591277.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.16e-49DNA-binding storekeeper protein-related transcriptional regulator