PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11386g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 174aa    MW: 19792.1 Da    PI: 6.5155
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11386g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB132.71.1e-4124982397
                     NF-YB 23 anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                              +n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGf++yv+plk+yl+kyrelegek
  Niben101Scf11386g00002.1 24 GNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAIGVLGFNEYVNPLKQYLNKYRELEGEK 98
                              69**********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008089.4E-202072IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471139.89E-3120110IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.6E-3825113IPR009072Histone-fold
PRINTSPR006153.3E-183654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.3E-185573No hitNo description
PRINTSPR006153.3E-187492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNWRETKISL FLLRLRASLR DETGNGKISK DAKETVQECV SEFISFVTGE ASDKCQREKR  60
KTINGDDIIW AIGVLGFNEY VNPLKQYLNK YRELEGEKLS VPNKQQQQQQ LHDHAHSPSL  120
PNYNSVYNSP SGLGLPQPSF VSTDQSFPLP LISQNSIQSQ LSQQEQQIDS VGHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B8e-32193194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A8e-32193194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488048.11e-107PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotQ9SIT95e-44NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A1S4BGP41e-106A0A1S4BGP4_TOBAC; nuclear transcription factor Y subunit B-3-like
STRINGXP_009598349.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.12e-43nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]