PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11399g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 199aa    MW: 21955.3 Da    PI: 10.0964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11399g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-101635827
                              GGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                              ++++tGtCk+G++CkF+H++
  Niben101Scf11399g00014.1 16 YYLKTGTCKFGATCKFHHPR 35
                              8*****************96 PP
2zf-CCCH35.61.5e-115881427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                               +C +++rt +Ck+G++CkF+H++
  Niben101Scf11399g00014.1 58 NECTYYMRTAQCKFGSTCKFHHPE 81
                              68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.915836IPR000571Zinc finger, CCCH-type
SMARTSM003560.64935IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-51537IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-41635IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-81635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0115481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3755582IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-65682IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-95781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-46080IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MHDLLNKLSQ LVLNWYYLKT GTCKFGATCK FHHPRDKAGI AGRVTLNVLG YPLHPNENEC  60
TYYMRTAQCK FGSTCKFHHP EPSNMMVSSR GSTVYPPGPS STTPGMPTRL SLGSMSLVLD  120
MTMKGAEAYE GHSWSGAIAA SLMSPWQGET SLRAQAGRAC PGRYGTPRAR SAAVRVIWYQ  180
SKHALQLLWR GVKLMNAQS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769505.13e-60PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
TrEMBLA0A1U7W5G88e-59A0A1U7W5G8_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X4
STRINGXP_009769498.19e-59(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.15e-36zinc finger protein 1