PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11491g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 276aa    MW: 31058.1 Da    PI: 6.3673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11491g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-08155202455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Niben101Scf11491g01004.1 155 SHSLAERVRRGKINEKLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 202
                               8*************************8....35599999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.52E-9149206No hitNo description
SuperFamilySSF474591.02E-15149217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.888151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-8157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MADHFINSPF SLFNIDSNMD FMNLFAEIIN PCSSELSSFN LQSSMEISHE NIFTQVAEFP  60
GNLQEYFQEN IQQENKINAS LVSCDMVPMN ESKKRKTIDT PESSSAYSSP AVSATGTKRS  120
IKRRGKSVKI SDEKEEKKPK EVVHVRAKRG QATDSHSLAE RVRRGKINEK LRCLQDIVPG  180
CYKTMGMAGM LDEIINYVQS LQNQVEFLSM KLTAASYNYD FNSESDILVS MQRAEALEAL  240
KMQKSKKELG CEGLSSNQVG PYDHSFGTFP LLPYNT
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497820.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK77e-59BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1S4C9K70.0A0A1S4C9K7_TOBAC; transcription factor BEE 3-like
STRINGXP_009777020.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.16e-59BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]