PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11508g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 410aa MW: 46567.9 Da PI: 7.6508

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11508g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.4	6.9e-50	39	164	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkat Niben101Scf11508g01003.1 39 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKAT 122 79*************************.89***********8778899*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g d+ + s++ + +glkktLvfy+g+ap+g +t+W+m+eyrl Niben101Scf11508g01003.1 123 GADRMIRSENWRSIGLKKTLVFYSGKAPNGIRTSWIMNEYRL 164 **************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.282	38	185	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-55	38	184	IPR003441	NAC domain
Pfam	PF02365	5.7E-25	40	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MAIVPFTSII MSQSQQDDTI NNITNTIKDD DDHAHDMVMP GFRFHPTEEE LVEFYLRRKV 60 EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK 120 ATGADRMIRS ENWRSIGLKK TLVFYSGKAP NGIRTSWIMN EYRLPQHETE RLQKAEISLC 180 RVHKRSGVED HPCLPRSLPT TRASSSSSSR GTSNSIKKQH HQQVVQNSLI SPYVVGQSSH 240 QQQIDEKLSI ETSASSTSTD HHHHHHHVAT SLGLNSLSNS YDSIALDHMA RGTVTSALLT 300 TSNSLSPFAS LVSPSSTGAV VHDLHTLINL DQQVVFHNQN FHNNPINHIP AVASQQFLQP 360 QVLPQHAQPQ SLLFQGSLQS SSSFSDRLWE WSSIQTDANC KDYQPNNPFK

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MAIVPFTSII MSQSQQDDTI NNITNTIKDD DDHAHDMVMP GFRFHPTEEE LVEFYLRRKV  60
EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK  120
ATGADRMIRS ENWRSIGLKK TLVFYSGKAP NGIRTSWIMN EYRLPQHETE RLQKAEISLC  180
RVHKRSGVED HPCLPRSLPT TRASSSSSSR GTSNSIKKQH HQQVVQNSLI SPYVVGQSSH  240
QQQIDEKLSI ETSASSTSTD HHHHHHHVAT SLGLNSLSNS YDSIALDHMA RGTVTSALLT  300
TSNSLSPFAS LVSPSSTGAV VHDLHTLINL DQQVVFHNQN FHNNPINHIP AVASQQFLQP  360
QVLPQHAQPQ SLLFQGSLQS SSSFSDRLWE WSSIQTDANC KDYQPNNPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	27	185	6	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	27	185	6	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	27	185	6	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	27	185	6	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	27	185	6	165	NAC domain-containing protein 19
4dul_B	1e-54	27	185	6	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796907.1	0.0	PREDICTED: putative NAC domain-containing protein 94 isoform X1
Refseq	XP_016470618.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVP8	1e-112	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1S4A1V9	0.0	A0A1S4A1V9_TOBAC; putative NAC domain-containing protein 94
TrEMBL	A0A1U7XY56	0.0	A0A1U7XY56_NICSY; putative NAC domain-containing protein 94 isoform X1
STRING	XP_009796907.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-107	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]