PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11531g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 521aa MW: 57556.8 Da PI: 7.5436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11531g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	374	422	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf11531g00002.1 374 NSHSLAERLRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 422 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-17	369	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.38E-9	369	426	No hit	No description
PROSITE profile	PS50888	15.535	371	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-17	372	438	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	374	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-10	377	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MRAEFRKVVF LIFKTCGKGE LFIVFINLLH FQRMDMGSKD DAESEKKCED ALSFQSPNMS 60 SDWQLSGSNL TNASLGMFSN SNPMVDSFCA SVWDHPISSS NFRLCDTNTQ MIHCNTNADR 120 LRTNVNRMLG MSWTQPNAMS LKGGMFVPPT PGMLPQSLSQ FPADPGFIER AARFSCFSGG 180 KVGDMKNPFT IPSSPNTYRN ALALHRPQEV FASNRLQSPS TATSQKQRIG NAVEDSEDVS 240 LPLEHGATDR SPIKHEKNES FARSLDEAKE CVGISANESD EAECSGHQEE VEGKDSSARG 300 LGSKKRKRNG QDTELDQTKG AQLMPAERTK DQTEIQKGEQ NRLGGKNGKQ GSQSADPPKE 360 EYIHIRARRG QATNSHSLAE RLRREKISER MKYLQDLVPG CNKVTGKAVM LDEIINYVQS 420 LQRQVEFLSM KLATINPQLD FNIDGLLAKD ILHSRMIPSS SLAFAPDMTM PYHSLQQLQS 480 GLLQSGLPGL GNSTDALLRS IYPHLSATSG GYKESSSQVA F

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MRAEFRKVVF LIFKTCGKGE LFIVFINLLH FQRMDMGSKD DAESEKKCED ALSFQSPNMS  60
SDWQLSGSNL TNASLGMFSN SNPMVDSFCA SVWDHPISSS NFRLCDTNTQ MIHCNTNADR  120
LRTNVNRMLG MSWTQPNAMS LKGGMFVPPT PGMLPQSLSQ FPADPGFIER AARFSCFSGG  180
KVGDMKNPFT IPSSPNTYRN ALALHRPQEV FASNRLQSPS TATSQKQRIG NAVEDSEDVS  240
LPLEHGATDR SPIKHEKNES FARSLDEAKE CVGISANESD EAECSGHQEE VEGKDSSARG  300
LGSKKRKRNG QDTELDQTKG AQLMPAERTK DQTEIQKGEQ NRLGGKNGKQ GSQSADPPKE  360
EYIHIRARRG QATNSHSLAE RLRREKISER MKYLQDLVPG CNKVTGKAVM LDEIINYVQS  420
LQRQVEFLSM KLATINPQLD FNIDGLLAKD ILHSRMIPSS SLAFAPDMTM PYHSLQQLQS  480
GLLQSGLPGL GNSTDALLRS IYPHLSATSG GYKESSSQVA F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792953.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_016462240.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A1S3ZCR3	0.0	A0A1S3ZCR3_TOBAC; transcription factor bHLH49-like
TrEMBL	A0A1U7XQ10	0.0	A0A1U7XQ10_NICSY; transcription factor bHLH49-like isoform X1
STRING	XP_009792953.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-104	bHLH family protein