PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11689g02014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 97aa    MW: 11408.1 Da    PI: 7.0029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11689g02014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00161639123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                              y C+ Cg + s ks+  +Hi + H
  Niben101Scf11689g02014.1 16 YYCEFCGICRSKKSLISSHILSyH 39
                              89******************9988 PP
2zf-C2H221.18e-076585323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ Cg sF  + +Lk+H+++H
  Niben101Scf11689g02014.1 65 CEECGVSFQKPAHLKQHMQSH 85
                              *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-71426No hitNo description
SMARTSM00355431639IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.43E-75488No hitNo description
SMARTSM003550.00956385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2616390IPR007087Zinc finger, C2H2
PfamPF128741.5E-46585No hitNo description
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-76593IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MGEEMREVIF RDIRRYYCEF CGICRSKKSL ISSHILSYHQ DEMEKRKDEA NEDAKINEGP  60
KLNICEECGV SFQKPAHLKQ HMQSHSLEVS FVCVLRL
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622481.25e-54PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ43e-23TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A168GMV51e-56A0A168GMV5_NICBE; Transcription factor IIIA 9ZF
STRINGXP_009622481.11e-53(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-18transcription factor IIIA