PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11694g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 217aa    MW: 23963.4 Da    PI: 4.3164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11694g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-182070256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +ykGVr +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a +aa  +l+ge
  Niben101Scf11694g01005.1 20 KYKGVRKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAAQFCLRGE 70
                              8*****999.*******999833...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-292079No hitNo description
PfamPF008473.7E-122070IPR001471AP2/ERF domain
PROSITE profilePS5103222.2862077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-302078IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-202079IPR016177DNA-binding domain
SMARTSM003802.2E-312083IPR001471AP2/ERF domain
PRINTSPR003674.7E-102132IPR001471AP2/ERF domain
PRINTSPR003674.7E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVRPTKSSDD ISSSSSSSLK YKGVRKRKWG KWVSEVRLPN SRERIWLGSY DTAEKAARAF  60
DAAQFCLRGE AAKLNFPDNP PDILNGGSMT AAEIQVAAVR FAISDPEPQE SISGPMDNSD  120
LSFSSLSSSS ELLHPESPST SISDGTVQPE YEVTEMPLHS EFLDLFFSLG TANNEYDFRT  180
FSEFSDLTGD HFLPALIDSG KENYEGCTLD GSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1720771472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KGVRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246428.11e-115PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1J6J8I71e-114A0A1J6J8I7_NICAT; Ethylene-responsive transcription factor erf017
STRINGXP_009613570.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-47ERF family protein