PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11737g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 188aa    MW: 21364.4 Da    PI: 4.3329
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11737g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.6e-10138182448
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                               +k+ +r  +NR AA rsR+RKk ++  Le k+  +e+e k+L  e
  Niben101Scf11737g00001.1 138 DKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGME 182
                               899***********************************9999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-10133183No hitNo description
PROSITE profilePS502179.588137183IPR004827Basic-leucine zipper domain
PfamPF001703.8E-8138180IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-9139183No hitNo description
CDDcd147043.69E-13140183No hitNo description
PROSITE patternPS000360142157IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVEDIDDIVG HINWDDVDDL FHNILEDHAD NLFSAHDPSA PSIQEIEQLL MKDDEIVGHV  60
AVREPDFQLA DDFLSDVLAD SPVQSDHSHS DKVNGFPDSK VSSGSEVDDD DKDKEKGSQS  120
PTESKDGSDE LNSNDPVDKK RKRQLRNRDA AVRSRERKKL YVRDLELKSR YFESECKRLG  180
MEVLMVLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139158KRKRQLRNRDAAVRSRERKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252016.11e-105PREDICTED: bZIP transcription factor 60
TrEMBLA0A1J6I2L21e-104A0A1J6I2L2_NICAT; Bzip transcription factor 60
STRINGXP_009608063.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71012128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.18e-08basic region/leucine zipper motif 60