PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11767g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 256aa MW: 29540.8 Da PI: 6.1291

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11767g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.8	5e-28	87	141	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++Wt+eLHerFv+av+ LGG+ +A P++i++ m+v gLtl+h+kSHLQkYR+ Niben101Scf11767g00003.1 87 KHRMKWTEELHERFVNAVADLGGAWEAKPRAIKRKMQVRGLTLYHIKSHLQKYRM 141 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.996	84	144	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-14	86	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-22	87	142	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.7E-25	87	142	IPR009057	Homeodomain-like
Pfam	PF00249	8.7E-10	89	140	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MFPLVPFAMN DNARQYSRIP ILDRHFQEPL NPLPLNNVAA LPNQNHQPLI FYGGMNVMNN 60 DHDNHLRFFD GYVPHVEQEV DQPRLVKHRM KWTEELHERF VNAVADLGGA WEAKPRAIKR 120 KMQVRGLTLY HIKSHLQKYR MAQEPDDEKR NSTKKLSLEE RQQKLLLEVE EQMKEVATKF 180 QTMLPFEDQA GSSKSVPMLP HQFPSVVLAP PVDVYIPQPP TEAADVHVPP EMEDMVAQSI 240 AENSVEDFLR ALELAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	87	143	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786306.1	1e-162	PREDICTED: uncharacterized protein LOC104234442 isoform X1
Refseq	XP_016513437.1	1e-162	PREDICTED: uncharacterized protein LOC107830405
TrEMBL	A0A1S4DJ92	1e-161	A0A1S4DJ92_TOBAC; uncharacterized protein LOC107830405
TrEMBL	A0A1U7X9G8	1e-161	A0A1U7X9G8_NICSY; uncharacterized protein LOC104234442 isoform X1
STRING	XP_009786306.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15338	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-21	G2-like family protein