PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11773g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 272aa    MW: 31147.8 Da    PI: 5.9116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11773g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.63.6e-38111231129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrF P+deelv++yL kk+++++ +l+ ++ e+d++++ePw+Lp                d+kyatg r+nrat+sgyWka
  Niben101Scf11773g01003.1  11 LPPGFRFYPSDEELVCHYLFKKIANED-SLKGTLVEIDLHTCEPWQLP----------------DRKYATGFRTNRATTSGYWKA 78 
                               79**********************999.45478**************9................789****************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                               tgkd++vl+  ++++vg++ktLvfyk+rap+g kt W+mhe+rle
  Niben101Scf11773g01003.1  79 TGKDRTVLDPrTRTTVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 123
                               *********966778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-509141IPR003441NAC domain
PROSITE profilePS5100546.24311141IPR003441NAC domain
PfamPF023651.5E-2312122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMGLRDIGAT LPPGFRFYPS DEELVCHYLF KKIANEDSLK GTLVEIDLHT CEPWQLPDRK  60
YATGFRTNRA TTSGYWKATG KDRTVLDPRT RTTVGMRKTL VFYKNRAPNG IKTGWIMHEF  120
RLENPNIPPK EDWVLCRVFH KAKAENSNNN NILSPQNTYE VGVVSSPNNN MDQYHALPYG  180
GYRPNMAGAA VSQRPFHQRQ KLFDLMEEDN NQSSYPQLSQ EMNKAPSNDQ IDEDESGFLL  240
DMNFEDPSLQ DGGVHSSIED MRFDNNNSLV FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-381014116165NO APICAL MERISTEM PROTEIN
1ut4_B2e-381014116165NO APICAL MERISTEM PROTEIN
1ut7_A2e-381014116165NO APICAL MERISTEM PROTEIN
1ut7_B2e-381014116165NO APICAL MERISTEM PROTEIN
3swm_A2e-381014119168NAC domain-containing protein 19
3swm_B2e-381014119168NAC domain-containing protein 19
3swm_C2e-381014119168NAC domain-containing protein 19
3swm_D2e-381014119168NAC domain-containing protein 19
3swp_A2e-381014119168NAC domain-containing protein 19
3swp_B2e-381014119168NAC domain-containing protein 19
3swp_C2e-381014119168NAC domain-containing protein 19
3swp_D2e-381014119168NAC domain-containing protein 19
4dul_A2e-381014116165NAC domain-containing protein 19
4dul_B2e-381014116165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800923.10.0PREDICTED: NAC domain-containing protein 21/22-like
RefseqXP_016469611.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-52NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1S3ZZ690.0A0A1S3ZZ69_TOBAC; NAC domain-containing protein 21/22-like
TrEMBLA0A1U7YCR10.0A0A1U7YCR1_NICSY; NAC domain-containing protein 21/22-like
STRINGXP_009800923.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-79NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]