PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11853g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 487aa    MW: 52827.4 Da    PI: 6.6183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11853g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-052312592355
                               HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Niben101Scf11853g00001.1 231 LRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 259
                               8999**98....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-8230273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-11231275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.40E-5231263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVHQD PTPPQGGFLK THDFLQPLEQ AEKALRKEEA  60
KVEVVAVEKP PAPVASPSVE HILPGGIGTY SISYLHQRIP KPEASLFAVA QATSTDRNDE  120
NSNCSSYTGG SGFTLWDESA VKKGKTGKEN SGGDRHTLRE AGLNTGGGQP TTSLEWQSQS  180
SSNHKHNTTA ISSLSSARQS SPLKTQSFVH MITSAKNAQD DDDDDDEDFM LRGIIPNSDQ  240
KRDKASFLLE VIEYIHFLQE KVHKYEESYQ GWENEPLKLP LSKCHRTTQG TSNHPQGTIN  300
ASGADPTYAV KFDENIMGIS STNPFNAQKV ELNISTTSLK ESSLRPGLTN KATTPSMSPK  360
TFPFCGASST AALYSSKLTA DTAKLESKSH PQFSVSRSHM TDYAIPNANS KGQDLSIESG  420
TISISSAYSQ GLLNTLTLAL QNSGVDLSQA NISVQIDLGK RANGRLHSSA SAIKAFRADD  480
EKQQSQV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757585.10.0PREDICTED: transcription factor BIM1 isoform X2
RefseqXP_016514052.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A1S4DKZ20.0A0A1S4DKZ2_TOBAC; transcription factor BIM1-like isoform X2
TrEMBLA0A1U7V7640.0A0A1U7V764_NICSY; transcription factor BIM1 isoform X2
STRINGXP_009757584.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.45e-63bHLH family protein