PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12039g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 235aa MW: 27166 Da PI: 5.6629

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12039g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.4e-10	188	222	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 kr +r NR +A+rsR RK+++i eLe+ v +L+ Niben101Scf12039g00002.1 188 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQ 222 899****************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.6E-10	188	222	No hit	No description
SuperFamily	SSF57959	8.44E-9	188	222	No hit	No description
Pfam	PF00170	1.4E-8	188	222	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.06E-17	189	222	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAHLPPRVPN MTPNWPDFSH HQKVDITTTT AIHNPSWVDQ FLDFSSMKRG SHRRSISDSI 60 AFLEAPMVEE RRRLSTPGKT TGSEFERFDD EQLMSMFNDX TTGSEFERFD DEQLMSMFND 120 DIANPSSPSD NNSINEEKKM STIISSDDQV MQQQQQLKTE PEEVESSCKS DQHATADNNS 180 SRKIVDPKRI KRILANRQSA QRSRVRKLQY ISELERSVTT LQVCKMIPSF NFLFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777081.1	1e-126	PREDICTED: basic leucine zipper 61-like
Refseq	XP_016468123.1	1e-126	PREDICTED: basic leucine zipper 61-like
Swissprot	F4IN23	2e-52	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A1S3ZUX9	1e-124	A0A1S3ZUX9_TOBAC; basic leucine zipper 61-like
TrEMBL	A0A1U7WIJ0	1e-124	A0A1U7WIJ0_NICSY; basic leucine zipper 61-like
STRING	XP_009777081.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1775	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	9e-54	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]