PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12141g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 686aa    MW: 78688.4 Da    PI: 6.4339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12141g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.7e-33189253128
                       NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s + + vg+kktLv+y+grap+g +tdWvmheyrl
  Niben101Scf12141g00009.1  18 SKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QMRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 92 
                               4667**************************************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.5221109IPR003441NAC domain
PfamPF023653.1E-161792IPR003441NAC domain
SuperFamilySSF1019411.18E-331797IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MEFKGFFFPN LRKSLLPSKD LEWYFFSPRD RKYPNGSRTN RATKAGYWKA TGKDRKVNSQ  60
MRSVGMKKTL VYYRGRAPHG ARTDWVMHEY RLDERECEVS NGLQRSLNGP KTGDVHYGSA  120
ASDRSSSIEI YSEGRCDKYH DMEIRSHDYA MPSSSSSTMA VHGPPMNVAT LTPSDDKWNM  180
QYLPNEAFSF KNSADHPIPN YGTLPYPPSK GRCDKYHDME IRSHDYAMPS SSSSTMAVHG  240
PPMNVATLTP SDDKWNMQYL PNEAFSFKNS ADHPIPNYGT LPYPPSKVNI ALECARLQHR  300
FALPPLEIQD FPQVDTKMPQ SSFIQSTNQT DIVEEILSVV QSSQNLINQD SSWGGNSSAP  360
VDGFSFLPPN NNQIHDLDSF HFIEQLKEDQ NVRSIDIGDF GEDFKSDRMA ENLRWIGMSD  420
RDLEKTFLED YKTVPIENVS AVQREGNQLQ GEDSVHYNSL NGLNETDTNN FSIGFDNDNL  480
FDDGDMTDGL SNSSSFEMYE KIEVNHGFYI ATRQAAKTFY HQVTPSTTLR IHRNLVTIHN  540
FPIYIGKISD STSIILKERT FLDNFIKKVT RPWTTTMRTL VGMVALLHAF FWICFGECLD  600
EKGSKLEDKR GIRVNEECLM EWEEKKKARE FKWDCYKQNK FSIAGKEGEK YCNVAVEKKW  660
PYLTLVVALS TIWLRTILSL LFYFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-29169260140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487654.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A1S4BFI30.0A0A1S4BFI3_TOBAC; NAC domain-containing protein 86-like
STRINGXP_009790763.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14952348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.18e-53NAC domain containing protein 28