PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12205g00011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 281aa MW: 32304.6 Da PI: 9.8485

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12205g00011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99	1.9e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Niben101Scf12205g00011.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP
2	K-box	78	2.3e-26	93	159	4	70
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 s++ s +ea+a+++qqe++kL+++i nLq+++R++lGe+L Lsl++L++Leq++ek+++kiRskK+ Niben101Scf12205g00011.1 93 SNTDSISEANAQYYQQEASKLRAQIGNLQNKNRNMLGECLAALSLRDLKNLEQNIEKGISKIRSKKY 159 444459************************************************************7 PP
3	K-box	63.1	1e-21	158	223	15	80
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 +++qqe++kL+++i nLq+++R++lGe+L Lsl++L++Leq++ek+++kiRskK + +++ Niben101Scf12205g00011.1 158 KYYQQEASKLRAQIGNLQNKNRNMLGECLAALSLRDLKNLEQNIEKGISKIRSKKIAETERAQQQQ 223 589***************************************************964333322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.4E-41	17	76	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.669	17	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.31E-44	18	94	No hit	No description
SuperFamily	SSF55455	1.83E-33	18	91	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	19	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-33	19	39	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-26	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-33	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-33	54	75	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.0E-18	101	158	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.146	103	219	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.4E-15	158	216	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVKE TIERYKKACS DSSNTDSISE ANAQYYQQEA SKLRAQIGNL 120 QNKNRNMLGE CLAALSLRDL KNLEQNIEKG ISKIRSKKYY QQEASKLRAQ IGNLQNKNRN 180 MLGECLAALS LRDLKNLEQN IEKGISKIRS KKIAETERAQ QQQQQQMNLM PGSSSYELVH 240 PPQQFDTRNY LQVNGLQTND HYTRQDQPSL QLTLFTALID C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_A	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	17	85	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233177.1	1e-141	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Swissprot	Q43585	1e-138	AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBL	I3QNW1	1e-146	I3QNW1_NICBE; Agamous
STRING	XP_009802759.1	1e-137	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	8e-94	MIKC_MADS family protein

Publications ? help Back to Top
Cheung AY,Zhan XY,Wang H,Wu HM Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein. Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8 [PMID:8632979]