PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12214g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 158aa    MW: 18769 Da    PI: 6.7924
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12214g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-15242547
                              -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              T++E+ l ++++ ++G++ W++Iar+++ gRt++ +k++w+++
  Niben101Scf12214g00007.1  2 TPQEERLVLELHSKWGNR-WSRIARKIP-GRTDNKIKNYWRTH 42
                              9*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.3E-10145IPR001005SANT/Myb domain
PROSITE profilePS5129423.092147IPR017930Myb domain
CDDcd001671.15E-9142No hitNo description
SuperFamilySSF466891.64E-11247IPR009057Homeodomain-like
PfamPF002497.3E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-19244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MTPQEERLVL ELHSKWGNRW SRIARKIPGR TDNKIKNYWR THTRKKTQEQ RKKYTCISPS  60
SSFSNSSSSS SITHEENERN FYDTGGIELL QIEGQKKVND QEQAGESMKV YSMDEIWKDI  120
ELLEENETIN KPIMGSISPL WDYCPDPMWK DFDWNTFR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444319.13e-94PREDICTED: transcription factor MYB48-like
SwissprotQ9LX822e-29MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S3XWS37e-93A0A1S3XWS3_TOBAC; transcription factor MYB48-like
STRINGXP_009792963.14e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.29e-32myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]