PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12245g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 343aa    MW: 38229.1 Da    PI: 7.6403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12245g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51131441129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                               lppGfrFhP+deel+++yL kkv+g+  e ++    + evd++k+ePw++p+ +  + kewyf+s+rd+kyatg r+nrat sgy
  Niben101Scf12245g00002.1  13 LPPGFRFHPRDEELICDYLMKKVAGSGSESDRhypLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATISGY 97 
                               79***********************99666443335899************7666789*************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatgkd+++++k++ lvg++ktLvfy+grapkg+ktdWvmhe+rle
  Niben101Scf12245g00002.1  98 WKATGKDRAIMRKGSCLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 144
                               ********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-603166IPR003441NAC domain
PROSITE profilePS5100557.08213165IPR003441NAC domain
PfamPF023653.1E-2614143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSNSSLSMVE SKLPPGFRFH PRDEELICDY LMKKVAGSGS ESDRHYPLLI EVDLNKSEPW  60
EIPEVACVGG KEWYFYSQRD RKYATGLRTN RATISGYWKA TGKDRAIMRK GSCLVGMRKT  120
LVFYQGRAPK GRKTDWVMHE FRLETTPPHI SSLKEDWVLC RVFHKNKELL ATKQGTGSSI  180
YHEHDTISSL SLPPLMDPYI TFDQPQPNNI NINTINMSEL YYEQVPCFSI FNPNQTISSH  240
SHHVPTTTTA GATGVFGGLP ADIGTYLNAA ATSSSCDNKV IKAVLSHLNI MEGSHNNNNI  300
NNPTPNNIVN IKAGGSPTSF GEGSSDTSFL SEVGLTTMWN NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5011683171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782234.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-108NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1U7X5S20.0A0A1U7X5S2_NICSY; NAC domain-containing protein 21/22-like
STRINGXP_009782234.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-107NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]