PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12314g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 324aa MW: 36921 Da PI: 8.6568

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12314g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL +kv ++++ + +i evd++k+ePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWka Niben101Scf12314g00005.1 17 LPPGFRFHPTDEELITHYLSNKVVDSNFFA-IAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKA 100 79***********************877.78***********888999*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkd+e+++ +++lvg+kktLvfykgrapkgekt+Wv+heyrle Niben101Scf12314g00005.1 101 TGKDREIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 143 *****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-58	13	148	IPR003441	NAC domain
PROSITE profile	PS51005	53.031	17	164	IPR003441	NAC domain
Pfam	PF02365	1.8E-28	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MENYLGLVKE DDQQMELPPG FRFHPTDEEL ITHYLSNKVV DSNFFAIAIG EVDLNKIEPW 60 DLPWKAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDREIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVIHEY RLEGRLSLQN LPKSAKIVSS KSAQISKGLV KLNSDENEMA 180 NSNCLPPLTD SSPYTSKIKP SASQSSHVHC FSNIFTAQKS QENMMNCFNN SPNFSALSNL 240 MNNQIFPVQS SFPSQVSFGM QNPTILKTLL ENYTQKFKKE DIVSLSQETK LSTDMNNEIS 300 SIASNLEMGR RLLEDQSLDC LWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-51	5	142	1	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802067.1	0.0	PREDICTED: NAC domain-containing protein 100 isoform X1
Refseq	XP_009802134.1	0.0	PREDICTED: NAC domain-containing protein 100 isoform X1
Refseq	XP_016439814.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X1
Refseq	XP_016439815.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X1
Swissprot	Q9FLJ2	1e-114	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3XIL9	0.0	A0A1S3XIL9_TOBAC; NAC domain-containing protein 100-like isoform X1
TrEMBL	A0A1U7YD76	0.0	A0A1U7YD76_NICSY; NAC domain-containing protein 100 isoform X1
STRING	XP_009802067.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-116	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]