PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12470g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 363aa    MW: 41377.5 Da    PI: 4.9699
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12470g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.91.8e-3087184187
                       TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...........sece 74 
                               a+g+kdrhsk++T++g+RdRRvRls ++a++f+d+ d+LG+d++s++i+WL+++ak+ai+ l + + ++a           ++c 
  Niben101Scf12470g02003.1  87 ATGRKDRHSKVSTAKGPRDRRVRLSPNTAIQFYDVLDRLGYDRPSEAIDWLIKEAKAAIDSLGEFPKTNAkmqyyfdqlldKSCI 171
                               589*********************************************************9988844444344444444444444 PP

                       TCP  75 aesssssasnsss 87 
                               ++s + s++n ++
  Niben101Scf12470g02003.1 172 EQSPRFSQQNYGI 184
                               4444444443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2888170IPR005333Transcription factor, TCP
PROSITE profilePS5136928.77490148IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNHQLQISEE EDGSSEEEED EEEVFQENGI ENFHSHCQNQ QLQQLPMPKW DNFTTYKEEL  60
NKVTKCMKAK RAKQDVIEVH RGRIIRATGR KDRHSKVSTA KGPRDRRVRL SPNTAIQFYD  120
VLDRLGYDRP SEAIDWLIKE AKAAIDSLGE FPKTNAKMQY YFDQLLDKSC IEQSPRFSQQ  180
NYGIPNSEYG VQNHQQEVNY DIPIQNVSLF SSAEGAKISF LSEFQSYPHD HFLNFQSFHE  240
DTILSSGDHQ DSFLTSSIPI YSNSSLEMTR YKRSLNGNVA SSNSGNGEDY SSFSLLGHHF  300
PSVLSETQVI SHREPLQSSF FPLICGDPLS TQLQTLSYDG FSGQISSAQR IQGEEEQGTF  360
SAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1895148154Putative transcription factor PCF6
5zkt_B2e-1895148154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794860.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016484781.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A1S4B7C50.0A0A1S4B7C5_TOBAC; transcription factor TCP4-like
TrEMBLA0A1U7Y7R50.0A0A1U7Y7R5_NICSY; transcription factor TCP4-like
STRINGXP_009794860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-35TCP family protein