PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12516g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 668aa    MW: 73362.1 Da    PI: 6.1107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12516g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.56.1e-1252906492374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lLl+cAeavs+++le+a+++L ++sela+p g++ qR+aayf eA++arl++s+ ++y+alp ++ +   +++ ++a+++f+ 
  Niben101Scf12516g02006.1 290 LTLLLQCAEAVSADNLEEANKTLLEVSELATPFGTSAQRVAAYFSEAISARLLNSCLGIYAALPITNVPVLYTQKMASAFQVFNG 374
                               579******************************************************************999************* PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                               +sP++kfsh+taNqaI ea+e+e+ vHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+
  Niben101Scf12516g02006.1 375 ISPFIKFSHFTANQAIQEAFEREDWVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMDALEATGKRLSDFAER 455
                               ***************************************************************....****************** PP

                      GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               lg+pfef + va+++ +l++e+L+v+++Ea+aV++    h+l+d ++  ++    +L+l+++l Pkvv+vveq+++h ++sFl r
  Niben101Scf12516g02006.1 456 LGLPFEFLP-VADKVGNLDPEKLNVSKREAVAVHWLQ--HSLYDVTGRDSN----TLSLLQRLGPKVVTVVEQDLSH-AGSFLGR 532
                               *********.7*************************9..999988888888....**********************.899**** PP

                      GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                               f+ea++yysalfdsl a +++eseer++vE++ll++ei+nv+a  g +r  + + +++Wre+l+++GF++++l  +aa+qa lll
  Niben101Scf12516g02006.1 533 FVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEIK-FNNWREKLQQSGFRAISLAGNAAAQATLLL 616
                               ************************************************888776.****************************** PP

                      GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++s+gy++ e++g+l lgWkd  L+++SaWr
  Niben101Scf12516g02006.1 617 GMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 649
                               ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.752263629IPR005202Transcription factor GRAS
PfamPF035142.1E-122290649IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAAYYSSSXV FSGLPLFPPD RNRQHGGLLL QQQPTTAAAA LASPLTTTAA SMEDSATSAT  60
AWIDGIIKDL INSSAQVSVP QLIQNVREII HPCNPYLASL LEYRLRSLTS NNNTNKNSGS  120
SADVHNDAME FWRRKEGVLP QLASLQQGQY MSPNSLQQHN ILSLPDSSNN HYLNWDIAAP  180
VASSLNQHQQ ISSNNNPAVI ADLSFVTSPP ILPPQLQQQQ QESSHSQQQA AVDLEQQKQQ  240
QSSSTSLSPT SATDSAKTKT TTPVVPVNTY REKKEEERQQ KRDEDGLHLL TLLLQCAEAV  300
SADNLEEANK TLLEVSELAT PFGTSAQRVA AYFSEAISAR LLNSCLGIYA ALPITNVPVL  360
YTQKMASAFQ VFNGISPFIK FSHFTANQAI QEAFEREDWV HIIDLDIMQG LQWPGLFHIL  420
ASRPGGPPFV RLTGLGTSMD ALEATGKRLS DFAERLGLPF EFLPVADKVG NLDPEKLNVS  480
KREAVAVHWL QHSLYDVTGR DSNTLSLLQR LGPKVVTVVE QDLSHAGSFL GRFVEAIHYY  540
SALFDSLGAC YGEESEERHV VEQQLLSKEI RNVLAVGGPS RSGEIKFNNW REKLQQSGFR  600
AISLAGNAAA QATLLLGMFP SHGYTLVEDN GTLKLGWKDL CLFTASAWRP NSFHTSPASR  660
HFSRPNVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02736523382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235274.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A1J6L4W60.0A0A1J6L4W6_NICAT; Protein scarecrow
STRINGXP_009615228.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein