PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12526g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 244aa MW: 27606.8 Da PI: 5.1696

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12526g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.8e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Niben101Scf12526g00012.1 91 RQRWTPTPVQLQILEQIFDQgNGTPSKQKIKDITLELsqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	101.9	4.4e-33	91	153	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq Niben101Scf12526g00012.1 91 RQRWTPTPVQLQILEQIFDQGNGTPSKQKIKDITLELSQHGQISETNVYNWFQNRRARSKRKQ 153 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.609	87	152	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.2E-17	89	154	IPR009057	Homeodomain-like
SMART	SM00389	2.8E-14	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.71E-18	89	154	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-18	91	151	IPR001356	Homeobox domain
CDD	cd00086	8.51E-14	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEWENPQQQP PQTVEDMNGA AEGGGRMFVI VMTDEQMEVL RKQIAVYAVI CEQLVDLHKS 60 MAVQHDLAGT RLGNLYCDPL ITSAGHRISG RQRWTPTPVQ LQILEQIFDQ GNGTPSKQKI 120 KDITLELSQH GQISETNVYN WFQNRRARSK RKQQGGGATN NVESEVETEV ELPNEKKTKP 180 EDLLQSSHMP TSRGEEGSSN PAGSFDQLSF YAMSNPRMDQ LIRKMEEPTS YHPYLHAENY 240 DMAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253116.1	1e-158	PREDICTED: WUSCHEL-related homeobox 13-like isoform X1
Swissprot	Q5QMM3	2e-79	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1J6IHE1	1e-157	A0A1J6IHE1_NICAT; Wuschel-related homeobox 13
STRING	XP_009597868.1	1e-153	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-74	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]