PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12582g02013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 248aa MW: 28033 Da PI: 10.3146

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12582g02013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.9	3e-30	50	103	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWt++LH+rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+ R+ Niben101Scf12582g02013.1 50 VRLRWTTDLHRRFVQAVERLGGQDRATPKLVLQLMNIKGLNIAHVKSHLQMCRS 103 59*************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.761	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-28	46	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-14	51	104	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-7	51	100	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	4.2E-22	51	105	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
DKLKREARLE LLPGMMDDSD DTDGGSSSNS TAEEGEKKLP VRPYVRSKMV RLRWTTDLHR 60 RFVQAVERLG GQDRATPKLV LQLMNIKGLN IAHVKSHLQM CRSKKTGDPT QAIIVRQHQD 120 SITGIPSFIS EISTWRTNEM KYDMGLFREQ KYGQGLFRKS PIDKLAPLFQ RAAKAKARLS 180 LLKRKAIDCD LIDLNLSLGV KQKNNSRDND DDESTLSLSM SSSRLKEEAN YATKENARRG 240 ASTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-15	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767509.1	3e-95	PREDICTED: two-component response regulator ARR18-like
Refseq	XP_016484800.1	3e-95	PREDICTED: two-component response regulator ARR18-like
TrEMBL	A0A1S4B775	7e-94	A0A1S4B775_TOBAC; two-component response regulator ARR18-like
TrEMBL	A0A1U7VYP9	7e-94	A0A1U7VYP9_NICSY; two-component response regulator ARR18-like
STRING	XP_009767509.1	1e-94	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-37	G2-like family protein