PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12628g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 228aa    MW: 25885 Da    PI: 6.1559
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12628g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-161484146
                              TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqk 46
                              rg W++eEde l+++  ++G                             W+ Ia++++ gRt++++k++w++
  Niben101Scf12628g00002.1 14 RGQWSPEEDETLKNYLLKHGITagnwitlphragsislsfflshthyiIWSVIASKLP-GRTDNDVKNHWNT 84
                              89********************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-20592IPR009057Homeodomain-like
PROSITE profilePS5129413.02990IPR017930Myb domain
SMARTSM007171.0E-121388IPR001005SANT/Myb domain
SuperFamilySSF466891.8E-101487IPR009057Homeodomain-like
PfamPF002492.0E-111484IPR001005SANT/Myb domain
CDDcd001676.85E-91786No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRTPCCDKT KVKRGQWSPE EDETLKNYLL KHGITAGNWI TLPHRAGSIS LSFFLSHTHY  60
IIWSVIASKL PGRTDNDVKN HWNTKLKKKL LATNANPTNN FESKQVFHSS SMVSREEEEQ  120
AVYSPIQFPC PNWESAGFNS ILNNNKSIVQ EDQKQFPLSR FSQDYSKIST SREGSMIFGS  180
SSVAMHENID LAWFDTFEGF PLDDEIIGAG LWTQQSVLED IDFPVTFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800251.11e-133PREDICTED: transcription factor RAX1-like
TrEMBLA0A1J6JFW11e-133A0A1J6JFW1_NICAT; Transcription factor rax2
STRINGXP_009800251.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1559057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-24myb domain protein 87