PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12690g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 438aa MW: 51239.4 Da PI: 10.3558

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12690g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.3	2e-36	95	248	3	130
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...ea 75 kkdrhski T +g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k ikel + s ss sec + Niben101Scf12690g01004.1 95 SKKDRHSKINTTKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKRrtstvmganSESSTSECevvSG 179 69***********************************************************9999998874444466655522 PP TCP 76 esssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekm 130 ++sss+++ + +++++ +k++k ++aa ++ +akesr++ar+rarert+ k+ Niben101Scf12690g01004.1 180 IDESSSNHK---AntkgnscnkekkkkekeEEEEEYKKKEKLVRRAAFHHPFAKESRKQARERARERTQLKK 248 222222222...122345666777777765556666688888999999******************9876 PP
2	TCP	117.8	1.4e-36	274	428	3	131
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...ea 75 kkdrhski T +g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k ikel + s ss sec + Niben101Scf12690g01004.1 274 SKKDRHSKINTTKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKRrtstvmganSESSTSECevvSG 358 69***********************************************************9999998874444466655522 PP TCP 76 esssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmr 131 ++sss+++ + +++++ +k++k ++aa ++ +akesr++ar+rarert+ k++ Niben101Scf12690g01004.1 359 IDESSSNHK---AntkgnscnkekkkkekeEEEEEYKKKEKLVRRAAFHHPFAKESRKQARERARERTQLKKN 428 222222222...122345666777777765556666688888999999******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-41	95	248	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.097	96	154	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.554	230	247	IPR017888	CYC/TB1, R domain
Pfam	PF03634	1.2E-41	274	427	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.097	275	333	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.554	409	426	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MYNSSNYSYN YNPIFSSNLF NIPSPCMRYE HDLFFQYYHD HLQQNLDDTL AEISAIINTA 60 DSNKDDAIIS RNELEQEQEA RKNKKGKVSI NKRVSKKDRH SKINTTKGPR DRRIRLSIDI 120 ARNFFNLQDM LRFEKASKTL EWLLIKSKSD IKELSKRRTS TVMGANSESS TSECEVVSGI 180 DESSSNHKAN TKGNSCNKEK KKKEKEEEEE EYKKKEKLVR RAAFHHPFAK ESRKQARERA 240 RERTQLKKNF CESGEVFNSK SLYSXKVSIN KRVSKKDRHS KINTTKGPRD RRIRLSIDIA 300 RNFFNLQDML RFEKASKTLE WLLIKSKSDI KELSKRRTST VMGANSESST SECEVVSGID 360 ESSSNHKANT KGNSCNKEKK KKEKEEEEEE YKKKEKLVRR AAFHHPFAKE SRKQARERAR 420 ERTQLKKNFC ESGNYYTL

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MYNSSNYSYN YNPIFSSNLF NIPSPCMRYE HDLFFQYYHD HLQQNLDDTL AEISAIINTA  60
DSNKDDAIIS RNELEQEQEA RKNKKGKVSI NKRVSKKDRH SKINTTKGPR DRRIRLSIDI  120
ARNFFNLQDM LRFEKASKTL EWLLIKSKSD IKELSKRRTS TVMGANSESS TSECEVVSGI  180
DESSSNHKAN TKGNSCNKEK KKKEKEEEEE EYKKKEKLVR RAAFHHPFAK ESRKQARERA  240
RERTQLKKNF CESGEVFNSK SLYSXKVSIN KRVSKKDRHS KINTTKGPRD RRIRLSIDIA  300
RNFFNLQDML RFEKASKTLE WLLIKSKSDI KELSKRRTST VMGANSESST SECEVVSGID  360
ESSSNHKANT KGNSCNKEKK KKEKEEEEEE YKKKEKLVRR AAFHHPFAKE SRKQARERAR  420
ERTQLKKNFC ESGNYYTL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616489.1	1e-146	PREDICTED: transcription factor CYCLOIDEA-like
TrEMBL	A0A314L154	1e-143	A0A314L154_NICAT; Transcription factor tcp18
STRING	XP_009616486.1	1e-145	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-23	TCP domain protein 12