PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12714g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 241aa    MW: 27625.4 Da    PI: 5.2636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12714g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.52.5e-23121383127
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                               +G+rFhPt+ el+ ++Lkk ++g++l+ e   ++ +di+    Pw++  ++ + eek  yfFs+ +k++++ +r +r+ ++g+Wk
  Niben101Scf12714g00012.1  12 MGVRFHPTEAELI-NFLKKFLKGEPLPSECPnFQLADICGDqPPWEIFgASNHPEEKVRYFFSRLKKQKSEHTRVRRTCANGTWK 95 
                               7************.9**********88755559999***87368***733333355677************************** PP

                       NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                +    ++++ kg+++g ++ + f + +++  ++  W+m+ey 
  Niben101Scf12714g00012.1  96 GQTCVDPIKNGKGTVIGFRRCFKFQSTTKEGESNKIWLMKEYF 138
                               *************************88888888999******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-279161IPR003441NAC domain
PROSITE profilePS5100525.84410162IPR003441NAC domain
PfamPF023655.2E-1512137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSTVAAARRR IMGVRFHPTE AELINFLKKF LKGEPLPSEC PNFQLADICG DQPPWEIFGA  60
SNHPEEKVRY FFSRLKKQKS EHTRVRRTCA NGTWKGQTCV DPIKNGKGTV IGFRRCFKFQ  120
STTKEGESNK IWLMKEYFVG DDFFRENNIP KEDIVVCRIK KNTRSEKNRG VNMEEQDVAN  180
VMEVILHGPD EDYCTTVQPA TICEAAENQV MDEAQKMNEE EINSADDVLL DIDDFGDIIC  240
C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789986.11e-155PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016490087.11e-155PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1S4BMM21e-154A0A1S4BMM2_TOBAC; NAC domain-containing protein 78-like
TrEMBLA0A1U7XK541e-154A0A1U7XK54_NICSY; NAC domain-containing protein 78-like
STRINGXP_009789986.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-14NAC domain containing protein 2