PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12726g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 222aa    MW: 25569.8 Da    PI: 9.1507
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12726g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32144202159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vk++++prsYYrCt  +C+vkk+ver aedp++v++tYeg+H h+
  Niben101Scf12726g00007.1 144 LDDGYKWRKYGQKVVKNTQHPRSYYRCTEDNCRVKKRVERLAEDPRMVITTYEGRHVHS 202
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33129202IPR003657WRKY domain
SuperFamilySSF1182902.48E-28137202IPR003657WRKY domain
PROSITE profilePS5081129.356139204IPR003657WRKY domain
SMARTSM007741.1E-36144203IPR003657WRKY domain
PfamPF031063.0E-25145201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MFSQSLFEDQ ADMSSQQYGF FTFPPNNNNT SLPFGICNQN TLKTLTIIPP SFAADNNSLI  60
ESTALRQKED VTTSIFGGPH LLSLQKSTAN TWSWGEVNVK RSRDNIIDDH LGVSAIKMKK  120
MKSSRRKVRE PRFCFKTLSD VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC TEDNCRVKKR  180
VERLAEDPRM VITTYEGRHV HSPSLDHEED SQASSQLNNL LW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27135201874Probable WRKY transcription factor 4
2lex_A5e-27135201874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452899.11e-161PREDICTED: probable WRKY transcription factor 28
SwissprotQ9SVB78e-57WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1S3YKZ11e-160A0A1S3YKZ1_TOBAC; probable WRKY transcription factor 28
STRINGXP_009782635.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-53WRKY DNA-binding protein 13