PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12852g03016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 716aa    MW: 76711.9 Da    PI: 6.9137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12852g03016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16443489455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Niben101Scf12852g03016.1 443 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 489
                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.46E-17435493No hitNo description
Gene3DG3DSA:4.10.280.102.9E-20436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-20436499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MPLSEFLKMA RGKFESGQQK VSSTTHLSSF PENDLVELVW ENGQIMMQGQ SSSAKKSPIP  60
NKLPSNASKI GKFGVMDSML NDMPLSVPTC ELDLIQEDEG VPWLGYAADD SLQQDYCSQF  120
LPEMSGVTAN EPSGQSEFGL INKGGSSDKM IRDSHSAPFH NAVNFEQRKA SPSSKFSQLC  180
SLAPQKGHPE SGVSDIFSSK VSNTPVSVYG DSSQNQAAVG EVKSIKIQKQ NMPGAGSCSS  240
LLNFSHFSRP ATFVKAAKPQ NIIAGPNVSD SYTVEAKGSK EGENVSKSHN NVNAAAVEDY  300
LSSKKETDLH YPTNVVTYQL ESRASGASFH DRSCRVEQSD NVFRDRSSNS DNTPGQCTGA  360
KAKPDTADGE RNAEHGVVCS SVCSGSSAER GSSDQPHKLK RKSRDNEDSG CPSEDVEEES  420
VGIKKICPTR GGTGSKRSRA AEVHNLSERR RRDRINEKMR ALQELIPNCN KADKASMLDE  480
AIEYLKTLQL QVQIMSMGAG FCVPPMMFPA GVQHMHAAQM PHFSPMGLGM GMGMGMGYGM  540
GMLEMNGRSS GCPIFPIPSV HGSHFPSPPI PASAAYPGVA VSNRHAFAHP GQGLPMPIPR  600
PSLAPLAGQS SAGAAVPSNV ARVGVSVDRP SVPPILDSKN PVHKKNSQIV NNAESSLPIN  660
QTCSQVQATN EILDKSALVQ KNDQLLDVTD SEANNLTSQS NVRGSEAGEF VLEKRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447452ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258592.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A314LFF60.0A0A314LFF6_NICAT; Transcription factor pif3
STRINGXP_009589214.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-48phytochrome interacting factor 3