PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12928g01020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 163aa    MW: 18777 Da    PI: 10.4491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12928g01020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-16791481895
                               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                               lp +f++++   ++++ t+tl de+g +W   +  +k++    l++GWk+F+ +++L +gD +vF+l++ ++f  +v+
  Niben101Scf12928g01020.1  79 LPSNFCRKNL--PRRDDTITLIDETGGEWPTVYLAQKNG----LSGGWKKFAVDHDLADGDAIVFHLIRPTKF--KVT 148
                               9*****9995..356679***************555555....9***********************998888..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-1742151IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-1668153IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-1978152IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-1379148IPR003340B3 DNA binding domain
PROSITE profilePS5086312.49279153IPR003340B3 DNA binding domain
CDDcd100174.92E-1879151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVMLKVKYEE LRQQRLEENK KRMEELNLPL LTQALKLSSS PKPSPMKKVK PRIIRTELVS  60
VRRSPRVANK PVPEYKEGLP SNFCRKNLPR RDDTITLIDE TGGEWPTVYL AQKNGLSGGW  120
KKFAVDHDLA DGDAIVFHLI RPTKFKVTLL NIKDVCKFVS EHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149636.13e-62B3 domain-containing protein Os06g0194400 isoform X3
SwissprotQ9FMZ41e-35Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A4D9AMS27e-63A0A4D9AMS2_SALSN; Uncharacterized protein
STRINGXP_009620219.15e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-32B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]